Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs11037096 chr11:1649350 T/C 2.07E-6 472 17.07 28.57 31.38 KM Plot
PRAD rs11038026 chr11:1668354 A/G 0 482 4.87 22.77 31.87 KM Plot
PRAD rs11038029 chr11:1668514 A/G 0 483 4.87 22.43 32.03 KM Plot
PRAD rs11038129 chr11:1671224 C/T 0 494 4.87 22.43 31.43 KM Plot
PRAD rs11040595 chr11:49878757 G/T 4.49E-6 489 31.3 27.47 37.8 KM Plot
PRAD rs1104223 chr1:201140210 G/A 4.51E-6 491 37.9 31.3 30.23 KM Plot
PRAD rs11049928 chr12:9426171 A/G 2.4E-9 494 31.27 28.18 32.28 KM Plot
PRAD rs11063874 chr12:723374 A/T 0.000142 487 31.33 28.48 22.67 KM Plot
PRAD rs11064120 chr12:768966 C/T 7.0E-5 494 31.32 30.23 29.95 KM Plot
PRAD rs11072599 chr15:76774508 T/C 8.46E-5 493 28.3 31.87 30.87 KM Plot
PRAD rs11087717 chr20:6091175 T/G 7.75E-6 493 31.23 29.05 31.77 KM Plot
PRAD rs11087718 chr20:6091183 T/C 7.75E-6 493 31.23 29.05 31.77 KM Plot
PRAD rs11089210 chr22:18445692 A/T 1.4E-6 491 30.9 31.65 26.37 KM Plot
PRAD rs1110659 chr22:18444675 T/C 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs1110660 chr22:18444693 A/C 3.96E-6 494 30.8 31.87 26.37 KM Plot